Summary
Academic Background
PhD
(Microbial Genetics And Genomics -Biotechnology) Universidade Federal de Minas Gerais
June 07, 2010 - March 27, 2013
Honours and Awards
Research Productivity Awd
Research Productivity Award, Pakistan Council for Science and Technology (PCST), for the year 2017.
January 10, 2018
31 Young Productive Sct
31st Young Productive Scientist of Pakistan (under 40) Pakistan Council for Science & Technology (PCST), for the year 2017.
January 01, 2018
Best Researcher Award
Best Researcher Award for the year 2016/17. Atta-ur-Rahman School of Applied Biosciences, NUST, in 2017
November 20, 2017
GOLD MEDAL
GOLD Medal and Prize in Emerging Technologies by Pakistan Academy of Sciences (PAS), for the year 2020.
January 20, 2021
School / College Best Researcher Award -2022
Publications
Investigating the Anti-Tubercular Potential of Novel Non-Antibiotic Agents against Drug-Resistant Mycobacterium Tuberculosis
November 04, 2024
Muhammad Fayaz Khan, Amjad Ali, Anwar Sheed, Sadiq Noor Khan, Ayesha Obaid, Faryal Mehwish, Abdul Jabbar,
BioScientific Review (BSR) - Volume 6, Issue 4, Pages 40-49
VacSol-ML(ESKAPE): Machine learning empowering vaccine antigen prediction for ESKAPE pathogens
September 17, 2024
Samavi Nasir, Farha Anwer, Zaara Ishaq, Muhammad Tariq Saeed, Amjad Ali,
Vaccine - Volume 42, Issue 22 , Article Number 126204
Whole-genome sequencing of three ciprofloxacin-resistant Salmonella Reading (ST93) strains, an emerging Salmonella serovar in the poultry sector of Pakistan
August 20, 2024
Abubakar Siddique, Azka Touqeer, Amjad Ali, Aitezaz Ahsan, Sajid Iqbal, Ami Patel, Terence Moore, Erika Ganda, Abdur Rahman,
Microbiology Resource Announcement - Volume 13, No. 9, Pages 1-4
Screening of potential vaccine candidates through machine learning approach
July 19, 2024
Samavi Nasir, Zaara Ishaq, Fatima Shahid, Tahreem Zaheer, Hajra Qayyum, Amjad Ali,
Book on Reverse Vaccinology: Concept, Methods, and Advancement - Chapter 10, Pages 179-201
Exploring optimal drug targets through subtractive proteomics analysis and pangenomic insights for tailored drug design in tuberculosis
May 13, 2024
Muhmmad Fayaz Khan, Amjad Ali, Hafiz Muzammel Rehman, Sadiq Noor Khan, Hafiz Muhammad Hammad, Maaz Waseem, Yurong Wu, Taane G. Clark, Abdul Jabbar,
Scientific Reports - Volume 14, Issue 1, Article Number 10904
Experimental trials of predicted CD4+ and CD8+ T-cell epitopes of respiratory syncytial virus
April 02, 2024
Syeda Tahira Qousain Naqvi, Syed Aun Muhammad, Jinlei Guo, Sidra Zafar, Amjad Ali, Larry J. Anderson, Christina A. Rostad, Baogang Bai,
Frontiers in Immunology - Volume: 15, Pages: 20
AbAMPdb: a database of Acinetobacter baumannii specific antimicrobial peptides
January 01, 2024
Farha Anwer, Ahmad Navid, Fiza Faiz, Uzair Haider, Samavi Nasir, Muhammad Farooq, Maryam Zahra, Anosh Bano, Hafiza Hira Bashir, Madiha Ahmad, Syeda Aleena Abbas, Shah E Room, Muhammad Tariq Saeed, Amjad Ali,
Database : The Journal of Biological Databases and Curation - Volume:2024, Article Number: baae096, Pages: 15
Immunoinformatics aided designing of a next generation poly-epitope vaccine against uropathogenic Escherichia coli to combat urinary tract infections
October 09, 2023
Zaara Ishaq, Tahreem Zaheer, Maaz Waseem, Hayeqa Shahwar Awan, Nimat Ullah, Abdullah F. AlAsmari, Fawaz AlAsmari, Amjad Ali,
Journal of Biomolecular Structure and Dynamics - Pages 1-21
Whole genomes from bacteria collected at diagnostic units around the world 2020
September 16, 2023
Sidsel Nag, Amjad Ali, Nimat Ullah, Frank Moller Aarestrup,
Scientific Data - Volume 10, Issue 1, Article Number:628
Genomic characterization and comparative genomic analysis of HS-associated Pasteurella multocida serotype B:2 strains from Pakistan
September 14, 2023
Sadia Mahboob, Nimat Ullah, Muhammad Farhan Ul Haque, Waqar Rauf, Mazhar Iqbal, Amjad Ali, Moazur Rahman,
BMC Genomics - Volume 24, Issue 1, Article Number 546
Virulence Factors and Antimicrobial Resistance of Uropathogenic Escherichia coli EQ101 UPEC Isolated from UTI Patient in Quetta, Balochistan, Pakistan
September 11, 2023
Sareen Fatima, Ali Akbar, Muhammad Irfan, Muhammad Shafee, Amjad Ali, Zaara Ishaq, Syed Kashif Raza, Abdul Samad, Mohammad Y. Alshahrani, Syed Shah Hassan,
BioMed Research International - Volume 2023, Article ID 7278070, 12 pages
Employing computational tools to design a multi-epitope vaccine targeting human immunodeficiency virus-1 (HIV-1)
May 24, 2023
Hamza Sher, Hafsa Sharif, Tahreem Zaheer, Sarmad Ahmad Khan, Amjad Ali, Hasnain Javed, Aneela Javed,
BMC Genomics - Volume 24, Issue 1, Article Number: 276
Whole-genome sequencing of multidrug resistance Salmonella Typhi clinical strains isolated from Balochistan, Pakistan
May 16, 2023
Sareen Fatima, Zaara Ishaq, Muhammad Irfan, Abdullah F. AlAsmari, Jahangir Khan Achakzai, Tahreem Zaheer, Amjad Ali, Ali Akbar,
Frontiers in Public Health - Volume 11, Article Number 1151805
Computational approaches in COVID-19 vaccine development
December 01, 2022
Hayeqa Shahwar Awan, Fatima Shahid, Almas Chaudhry, Amjad Ali,
Book on Omics Approaches and Technologies in COVID-19 - 1st Edition, Chapter 21, Pages 339-350
Genomics, metagenomics, and pan-genomics approaches in COVID-19
December 01, 2022
Maaz Waseem, Amina Basheer, Farha Anwer, Fatima Shahid, Tahreem Zaheer, Amjad Ali,
Book on Omics Approaches and Technologies in COVID-19 - 1st Edition, Chapter 2, Pages 23-39
Comparative Pan-Genomic Analysis Revealed an Improved Multi-Locus Sequence Typing Scheme for Staphylococcus aureus
November 19, 2022
Maira Jalil, Fatima Qudoos, Farha Anwer, Samavi Nasir, Abdur Rahman, Metab Alharbi , Abdulrahman Alshammari , Huda Kamel Alshammari , Amjad Ali,
Genes - Volume 13(11), Article Number 2160
Molecular Docking and Molecular Dynamics Studies Reveal Secretory Proteins as Novel Targets of Temozolomide in Glioblastoma Multiforme
October 24, 2022
Sumera, Farha Anwer, Maaz Waseem, Areeba Fatima, Nishat Malik, Amjad Ali, Saadia Zahid,
Molecules - Volume 27, Issue 21, Article Number 7198
Integrated bioinformatics and computational biology approaches; Application in diagnosis and therapeutics
June 20, 2022
Fatima Shahid, Shifa Tariq Ashraf, Hayeqa Shahwar Awan, Amina Basheer, Amjad Ali,
Book on Omics Technologies for Clinical Diagnosis and Gene Therapy - Volume 1, Chapter 8, Pages 114-136
Draft genome sequences of 25 Salmonella enterica serovar Agona strains isolated from poultry and associated food products harbouring multiple antibiotic resistance genes
June 01, 2022
Muhammad Abubakar Siddique, Nimat Ullah, Amjad Ali, Ami Patel, Terence Moore, Sophia M. Kenney, Erika Ganda, Abdur Rahman,
Journal of Global Antimicrobial Resistance - Volume 29, Pages 131-135
Experimental Study of Potential CD8+ Trivalent Synthetic Peptides for Liver Cancer Vaccine Development Using Sprague Dawley Rat Models
May 31, 2022
Sidra Zafar, Baogang Bai, Jinlei Guo, Syed Aun Muhammad, Syeda Tahira Qousain Naqvi, Muhammad Nauman Shabbir , Imran Imran, Rehan Sadiq Shaikh , Amjad Ali,
BioMed Research International - Volume 2022, Article ID 4792374, 18 pages
In silico designed Staphylococcus aureus B-cell multi-epitope vaccine did not elicit antibodies against target antigens suggesting multi-domain approach
May 01, 2022
Nimat Ullah, Farha Anwer, Zaara Ishaq, Abubakar Siddique, Majid Ali Shah, Moazur Rahman , Abdur Rahman, Xinrui Mao, Tingting Jiang, Bok Luel Lee, Taeok Bae, Amjad Ali,
Journal of Immunological Methods - Volume 504, Article Number 113264
Lacticaseibacillus rhamnosus FM9 and Limosilactobacillus fermentum Y57 Are as Effective as Statins at Improving Blood Lipid Profile in High Cholesterol, High-Fat Diet Model in Male Wistar Rats
April 15, 2022
Hamza Zafar, Noor ul Ain, Abdulrahman Alshammar, Saeed Alghamdi, Hafsa Raja, Amjad Ali, Abubakar Siddique, Syeda Dua Tahir, Samina Akbar, Maryum Arif, Metal Alharbi, Abdur Rahman,
Nutrients - Volume 14, Issue 8, Article Number 1654
Comparative Genomic Analysis of a Panton–Valentine Leukocidin-Positive ST22 Community-Acquired Methicillin-Resistant Staphylococcus aureus from Pakistan
April 08, 2022
Nimat Ullah, Samavi Nasir, Zaara Ishaq, Farha Anwer, Tanzeela Raza, Moazur Rahman, Abdulrahman Alshammari, Metab Alharbi, Taeok Bae , Abdur Rahman, Amjad Ali,
Antibiotics - Volume 11(4), Article Number 496
Applications of microbial omics in healthcare
April 01, 2022
Fatima Shahid, Tahreem Zaheer, Hayeqa Shahwar Awan, Maaz Waseem, Amina Basheer, Amjad Ali,
Book on Biotechnology in Healthcare Volume 1: Technologies and Innovations - Edition 1, Chapter 13, Pages 227-248
Evaluation of Blood-Brain-Barrier Permeability, Neurotoxicity, and Potential Cognitive Impairment by Pseudomonas aeruginosa’s Virulence Factor Pyocyanin
March 17, 2022
Muhammad Ibrahim Rashid, Habiba Rashid, Saadia Andleeb, Amjad Ali,
Oxidative Medicine and Cellular Longevity - Volume 2022, Article ID 3060579
Antimicrobial Resistance of Shigella fexneri in Pakistani Pediatric Population Reveals an Increased Trend of Third‑Generation Cephalosporin Resistance
February 27, 2022
Iqbal Nisa, Mohammad Haroon, Arnold Driessen, Jeroen Nijland, Hazir Rahman, Nusrat Yasin, Mubashir Hussain, Taj Ali Khan, Amjad Ali, Saeed Ahmad Khan, Muhammad Qasim,
Current Microbiology - Volume 79, Article Number: 118
The Epidemiological and Pangenome Landscape of Staphylococcus aureusand Identification of Conserved Novel Candidate Vaccine Antigens
February 01, 2022
Kanwal Naz, Nimat Ullah, Anam Naz, Sidra Irum, Hamza Arshad Dar, Tahreem Zaheer, Fatima Shahid, Amjad Ali,
Current Proteomics - Volume 19, Issue 1, Pages 114-126
Tools for Prediction and Validation of Epitopic Regions on Protein Targets for Vaccine Development and Diagnostics
December 15, 2021
Soban Tufail , Majid Ali Shah, Maryam Zafar, Mazhar Iqbal, Amjad Ali, Aamir Shehzad, Moazur Rahman,
Book on Frontiers in Molecular Pharming - Volume 2, Chapter 1, Pages 1-29
Quest for Novel Preventive and Therapeutic Options Against Multidrug-Resistant Pseudomonas aeruginosa
December 01, 2021
Sidra Irum, Saadia Andleeb, Amjad Ali, Muhammad Ibrahim Rashid, Mahnoor Majid,
International Journal of Peptide Research and Therapeutics - Volume 27, Issue 4, Pages 2313-2331
Lactobacillus reuteri and Enterococcus faecium from Poultry Gut Reduce Mucin Adhesion and Biofilm Formation of Cephalosporin and Fluoroquinolone-Resistant Salmonella enterica
December 01, 2021
Abubakar Siddique, Sara Azim, Amjad Ali , Fazal Adnan , Maryum Arif , Muhammad Imran, Erika Ganda, Abdur Rahman ,
Animals - Volume 11(12), Article Number 3435
Antimicrobial Resistance and Genomic Characterization of Six New Sequence Types in Multidrug-Resistant Pseudomonas aeruginosa Clinical Isolates from Pakistan
November 12, 2021
Sidra Irum, Kanwal Naz, Nimat ullah, Zeeshan Mustafa, Amjad Ali, Muhammad Arsalan, Kashaf Khalid, Saadia Andleeb,
Antibiotics-Basel - Volume 10, Issue 11, Article Number 1386
Ftsh Sensitizes Methicillin-Resistant Staphylococcus aureus to β-Lactam Antibiotics by Degrading YpfP, a Lipoteichoic Acid Synthesis Enzyme
October 01, 2021
Won-Sik Yeo, Bohyun Jeong, Nimat Ullah, Majid Ali Shah, Amjad Ali, Kyeong Kyu Kim, Taeok Bae,
Antibiotics-Basel - Volume 10(10), Article Number 1198
Genomic Investigation of Methicillin-Resistant Staphylococcus aureus ST113 Strains Isolated from Tertiary Care Hospitals in Pakistan
September 17, 2021
Nimat Ullah, Hamza Arshad Dar, Kanwal Naz, Saadia Andleeb, Abdur Rahman, Muhammad Tariq Saeed, Fazal Hanan, Taeok Bae, Amjad Ali,
Antibiotics-Basel - Volume 10(9), Article Number 1121
Long non-coding RNAs and their targets as potential biomarkers in breast cancer
September 01, 2021
Maryam Khalid, Rehan Zafar Paracha, Maryum Nisar, Sumaira Malik, Salma Tariq, Iqra Arshad, Amnah Siddiqa,, Dr Zamir Hussain, Jamil Ahmad, Amjad Ali ,
IET Systems Biology - Volume 15, Issue 5, Pages 137-147
Antimicrobial Resistance Profiling of Biofilm Forming Non Typhoidal Salmonella enterica Isolates from Poultry and Its Associated Food Products from Pakistan
June 28, 2021
Abubakar Siddique, Sara Azim, Amjad Ali, Saadia Andleeb, Aitezaz Ahsan, Muhammad Imran, Abdur Rahman,
Antibiotics - Volume 10(7), Article Number 785
Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
June 24, 2021
Fatima Shahid, Tahreem Zaheer, Shifa Tariq Ashraf, Muhammad Shehroz, Farha Anwer, Anam Naz, Amjad Ali,
Scientific Reports - Volume 11, Article Number: 13213
Designing of Potential Polyvalent Vaccine Model for Respiratory Syncytial Virus by System Level Immunoinformatics Approaches
May 28, 2021
Syeda Tahira Qousain Naqvi, Mamoona Yasmeen, Mehreen Ismail, Syed Aun Muhammad, Syed Nawazish-i-Husain, Amjad Ali, Fahad Munir, Qi Yu Zhang,
BioMed Research International - Volume 2021, Article ID 9940010, 18 pages
Prediction of Prophylactic Peptide Vaccine Candidates for Human Papillomavirus (HPV): An Immuno-informatics and Reverse Vaccinology Approach
May 04, 2021
Mehreen Ismail, Zureesha Sajid, Amjad Ali, Xiaogang Wu, Syed Aun Muhammad, Rehan Sadiq Shaikh,
Current Proteomics - Volume 18, 5 Issues, Pages 178-192
A Multi-Method and Structure-Based In Silico Vaccine Designing Against Helicobacter pylori Employing Immuno-Informatics Approach
April 01, 2021
Anam Naz, Tahreem Zaheer, Hamza A Dar, Faryal Mehwish Awan, Ayesha Obaid, Shifa Tariq Ashraf, Rehan Zafar Paracha , Arif Malik, Amjad Ali ,
Current Proteomics - Volume 18, Issue 2, Pages 237-247
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021
January 08, 2021
CNCB-NGDC Members and Partners, Amjad Ali,
Nucleic Acids Research - Volume 49(D1), Pages D18-D28
The emerging role and significance of circular RNAs in viral infections and antiviral immune responses: possible implication as theranostic agents
January 01, 2021
Faryal Mehwish Awan, Burton B. Yang, Anam Naz, Aneeqa Hanif, Aqsa Ikram, Ayesha Obaid, Arif Malik, Hussnain Ahmed Janjua, Amjad Ali , Sumaira Sharif,
RNA Biology - Volume 18, Issue 1, Pages 1-15
Structural and functional annotation of PR/SET Domain (PRDM) protein family: In-silico study elaborating role of PRDM12 mutation in congenital insensitivity to pain
December 01, 2020
Sarmad Mehmood, Rubina Dad, Arsalan Ahmed, Muhammad Ikram Ullah, Peter John, Amjad Ali, Christian A. Hubner, Aisha Mohyuddin, Muhammad Jawad Hassan,
Computational Biology and Chemistry - Volume 89, Article Number 107382
Identification of novel vaccine candidates against carbapenem resistant Klebsiella pneumoniae: A systematic reverse proteomic approach
December 01, 2020
Asim Mehmood, Samar Naseer, Amjad Ali, Hina Fatimah, Shazia Rehman, Aysha Karim Kiani,
Computational Biology and Chemistry - Volume 89, Article Number 107380
Multiepitope Subunit Vaccine Design against COVID-19 Based on the Spike Protein of SARS-CoV-2: An in Silico Analysis
November 19, 2020
Hamza Arshad Dar, Yasir Waheed, Muzammil Hasan Najmi, Saba Ismail, Helal F. Hetta, Amjad Ali, Khalid Muhammad ,
Journal of Immunology Research - Volume 2020, Article ID 8893483
Pangenome Analysis of Mycobacterium tuberculosis Reveals Core-Drug Targets and Screening of Promising Lead Compounds for Drug Discovery
November 17, 2020
Hamza Arshad Dar , Tahreem Zaheer, Nimat Ullah, Syeda Marriam Bakhtiar, Tianyu Zhang , Muhammad Yasir, Esam I. Azhar , Amjad Ali,
Antibiotics - Volume 9(11), Article Number 819
Anti-COVID-19 multi-epitope vaccine designs employing global viral genome sequences
August 01, 2020
Tahreem Zaheer, Maaz Waseem, Walifa Waqar, Hamza Arshad Dar, Muhammad Shehroz, Kanwal Naz, Zaara Ishaq, Tahir Ahmad, Nimat Ullah, Syeda Marriam Bakhtiar, Syed Aun Muhammad, Amjad Ali,
PeerJ - Volume 8, Article Number e9541
Designing Multi-Epitope Vaccines to Combat Emerging Coronavirus Disease 2019 (COVID-19) by Employing Immuno-Informatics Approach
July 10, 2020
Anam Naz, Fatima Shahid, Tariq Tahir Butt, Faryal Mehwish Awan, Amjad Ali, Arif Malik,
Frontiers in Immunology - Volume 11, Article Number 1663
A fungal based synthesis method for copper nanoparticles with the determination of anticancer, antidiabetic and antibacterial activities
July 01, 2020
Sadaf Noor, Ziaullah Shah, Aneela Javed, Amjad Ali, Syed Bilal Hussain, Sidra Zafar, Hazrat Ali, Syed Aun Muhammad,
Journal of Microbiological Methods - Volume 174, Article Number 105966
Experimental Analysis of T-Cell Epitopes for Designing Liver Cancer Vaccine Predicted by System Level Immuno-informatics Approach
June 01, 2020
Syed Aun Muhammad, Sidra Zafar, Samana Zahra Rizvi, Imran Imran, Fahad Munir , Muhammad Babar Jamshed, Amjad Ali, Xiaogang Wu, Numan Shahid, Muhammad Zaeem, Qiyu Zhang,
American Journal of Physiology-Gastrointestinal and Liver Physiology - Volume 318, Issue 6, Pages G1055-G1069
Evaluation of Pyocyanin induced systemic pathogenicity of
Pseudomonas aeruginosa
May 01, 2020
Muhammad Ibrahim Rashid, Saadia Andleeb, Amjad Ali,
Pakistan Journal of Pharmaceutical Sciences - Volume 33, No.3, Pages 915-922
Pan-genomics of model bacteria and their outcomes
March 13, 2020
Kanwal Naz, Nimat Ullah, Tahreem Zaheer, Muhammad Shehroz, Anam Naz, Amjad Ali,
Book on Pan-genomics: Applications, Challenges, and Future Prospects - Chapter 9, Pages 317-333
Reverse vaccinology and drug target identification through pan-genomics
March 13, 2020
Anam Naz, Ayesha Obaid, Fatima Shahid, Hamza Arshad Dar, Kanwal Naz, Nimat Ullah, Amjad Ali,
Book on Pan-genomics: Applications, Challenges, and Future Prospects - Chapter 16, Pages 317-333
Comparative Analysis of Whole-Genome and Methylome Profiles of a Smooth and a Rough Mycobacterium abscessus Clinical Strain
January 01, 2020
Chiranjibi Chhotaray, Shuai Wang, Yaoju Tan, Amjad Ali, Muhammad Shehroz, Cuiting Fang, Yang Liu, Zhili Lu, Xingshan Cai, M. Adnan Hameed, Md Mahmudul Islam, Goverdhan Surineni, Shouyong Tan, Jianxiong Liu, Tianyu Zhang,
G3: Genes, Genomes, Genetics - Volume 10(1), Pages 13–22.
Whole-genome sequencing of a new sequence type (ST5352) strain of community-acquired methicillin-resistant Staphylococcus aureus from a hospital in Pakistan
December 01, 2019
Nimat Ullah, Tanzeela Raza, Hamza Arshad Dar, Muhammad Shehroz, Tahreem Zaheer, Kanwal Naz, Amjad Ali,
Journal of Global Antimicrobial Resistance - Volume 19, Pages 161-163
Synergy of Green Tea Reduced Tamoxifen-Loaded Silver Nanoparticles Exhibit OGT Downregulation in Breast Cancer Cell Line
August 19, 2019
Mariam Rasheed, Amjad Ali, Shahzina Kanwal, M. Ismail, Nadeem Sabir, Faheem Amin,
Digest Journal of Nanomaterials and Biostructures - Volume 14, Issue 3, Pages 695-704
Systems-Level Understanding of Single-Cell Omics
July 11, 2019
Anam Naz, Ayesha Obaid, Aqsa Ikram, Faryal Mehwish Awan, Maryum Nisar, Rehan Zafar Paracha, Amjad Ali,
Book on Single-Cell Omics - Chapter 20, Volume 1 (Technological Advances), Pages 433-456
The Route to 'Chemobrain' - Computational probing of neuronal LTP pathway
July 03, 2019
Ammad Fahim, Zaira Rehman, Muhammad Faraz Bhatti, Nasar um Minullah Virk, Amjad Ali, Amir Rashid, Rehan Zafar Paracha,
Nature Scientific Reports - Volume 9, Article Number 9630
Fishing for vaccines against Vibrio cholerae using in silico pan-proteomic reverse vaccinology approach
June 19, 2019
Muhammad Ibrahim Rashid, Sammia Rehman, Amjad Ali, Saadia Andleeb,
PeerJ - Volume: 7, Article Number: e6223
Computational Modeling and Analysis of the Impacts of Sleep Deprivation on Glucose Stimulated Insulin Secretion
May 31, 2019
Hufsah Ashraf, Hufsah Ashraf, Jamil Ahmad, Jamil Ahmad, Azka Hassan, Azka Hassan, Amjad Ali,
Biosystems - Volume 179, Pages 1-14
Preliminary Work Towards Finding Proteins as Potential Vaccine Candidates for Vibrio cholera Pakistani Isolates through Reverse Vaccinology
May 23, 2019
Samia Zeb, Amjad Ali, Sardar Muhammad Gulfam, Habib Bokhari,
Medicina - Volume 55, Issue 5, Article Number UNSP 195
Formal model of the interplay between TGF-β1 and MMP-9 and their dynamics in hepatocellular carcinoma
April 16, 2019
Shifa Tariq Ashraf, Ayesha Obaid, Muhammad Tariq Saeed, Anam Naz, Fatima Shahid, Jamil Ahmad, Amjad Ali,
Mathematical Bio sciences and Engineering - Volume 16, Issue 5, Pages 3285–3310
A systematic simulation-based meta-analytical framework for prediction of physiological biomarkers in alopecia
April 04, 2019
Syed Aun Muhammad, Nighat Fatima, Rehan Zafar Paracha, Amjad Ali, Jake Y. Chen,
Journal of Biological Research-Thessaloniki - Volume 26, Article Number 2
MicroRNAs and their target mRNAs as Potential Biomarkers among Smokers and Non-Smokers with Lung Adenocarcinoma
April 01, 2019
Sumaria Malik, Rehan Zafar Paracha, Maryam Khalid, Maryum Nisar, Amnah Siddiqa, Zamir Hussain, Raheel Nawaz, Amjad Ali, Jamil Ahmad,
IET Systems Biology - Volume 13, Issue 2, Pages 69-76
PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome
March 12, 2019
Kanwal Naz, Kanwal Naz, Anam Naz, Shifa Tariq Ashraf, Muhammad Rizwan, Jamil Ahmad, Jan Baumbach, Amjad Ali,
BMC Bioinformatics - Volume 20, Article Number 123
Reverse Vaccinology Approach to Potential Vaccine Candidates Against Acinetobacter baumannii
February 24, 2019
Fatima Shahid, Fatima Shahid, Shifa Tariq Ashraf, Shifa Tariq Ashraf, Amjad Ali,
Book on Acinetobacter Baumannii - Methods and Protocols - Pages 329-336
Subtractive genomics approaches: Towards anti-bacterial drug discovery
January 01, 2019
Fatima Shahid, Muhammad Shehroz, Tahreem Zaheer, Amjad Ali,
Frontiers in Anti-infective Drug Discovery - Chapter No. 5, Pages: 44-158,
Parameter estimation of qualitative biological regulatory networks on high performance computing hardware
December 29, 2018
Muhammad Tariq Saeed, Jamil Ahmad, Jan Baumbach, Josch Pauling, Aamir Shaf, Rehan Zafar Paracha, Asad Hayat, Amjad Ali,
BMC Systems Biology - Volume 12, Article Number 146
Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus-A Co-expression Network Based Analysis
December 21, 2018
Amnah Siddiqa, Elisa Cirillo, Samar H. K. Tareen, Amjad Ali, Martina Kutmon, Lars M. T. Eijssen, Ahmad Jamil, Chris T. Evelo, Susan L. Coort,
Frontiers in Physiology - Volume 9, Article Number 1841
A novel multiepitope peptide vaccine construct against influenza a virus and Streptococcus Pneumoniae Co-infection: An Insilico Approach
December 01, 2018
Maha Kaiser, Amjad Ali,
NUST Journal of Natural Sciences - Volume 4, Issue: 1, Pages 30-50
Identification of Key Genes and Pathways Involved in Compensatory Pancreatic Beta Cell Hyperplasia During Insulin Resistance.
November 15, 2018
Amnah Siddiqa, Jamil Ahmad, Zurah Bibi, Rehan Zafar Paracha, Amjad Ali,
Advances in Computational Science and Computing - pp 420-427
Model-based in silico analysis of the PI3K/Akt pathway: the elucidation of cross-talk between diabetes and breast cancer
November 09, 2018
Sammia Rehman, Ayesha Obaid, Anam Naz, Amjad Ali, Shahzina Kanwal, Jamil Ahmed,
PeerJ - PeerJ Volume: 6
Functional Annotation and Analysis of Dual Oxidase 1 (DUOX1): a Potential Anti-pyocyanin Immune Component
October 24, 2018
Muhammad Ibrahim Rashid, Amjad Ali, Saadia Andleeb,
Interdisciplinary Sciences: Computational Life Sciences - Volume: 10, 27 November 2018
Structural insights and characterization of human Npas4 protein
June 14, 2018
Ammad Fahim, Zaira Rehman, Muhammad Faraz Bhatti, Amjad Ali, Nasar Virk, Amir Rashid, Rehan Zafar Paracha,
PeerJ - NULL
Model of the adaptive immune response system against HCV infection reveals potential immunomodulatory agents for combination therapy
June 11, 2018
Ayesha Obaid, Anam Naz, Aqsa Ikram, Faryal Mehwish Awan, Abida Raza, Jamil Ahmad, Amjad Ali,
Scientific Reports - NULL
Modeling and analysis of the impacts of jet lag on circadian rhythm and its role in tumor growth
June 06, 2018
Azka Hassan, Jamil Ahmad, Hufsah Ashraf, Amjad Ali,
PeerJ - NULL
Incidence of metallo-beta-lactamase-producing Klebsiella pneumoniae isolates from hospital setting in Pakistan
June 01, 2018
Aqsa Humayun, Fariha Masood Siddiqui, Neelam Akram, Sidra Saleem, Amjad Ali, Tariq Iqbal, Ashok Kumar, Rubina Kamran, Habib Bokhari,
International Microbiology - Volume 21, Issue 1–2, Pages 73–78
Analyzing the behavior of neuronal pathways in Alzheimer’s Disease using Petri net modeling approach
May 23, 2018
Javaria Ashraf, Jamil Ahmad, Amjad Ali, Zaheer Ul-Haq,
Frontiers in Neuroinformatics - -
Advances in Microbial Genomics in the Post-Genomics Era
May 01, 2018
Amjad Ali, Tanzeela Raza, Hira Sikandar,
Book on Advances in Biotechnology - Chapter 3, Pages 1-32
In silico drug repurposing via chemical-protein interaction analysis, a proof-of-concept study: targeting pyocyanin based virulence of antibiotic resistant Pseudomonas aeruginosa
March 15, 2018
Muhammad Ibrahim Rashid, Parkha Tariq, Habiba Rashid, Amjad Ali, Saadia Andleeb,
International Journal of Biosciences - NULL
Draft genome sequence of a Salmonella enterica serovar Typhi strain resistant to fourth-generation cephalosporin and fluoroquinolone antibiotics
October 19, 2017
Danish Gul, Robert F. Potter, Hurmat Riaz, Shifa Tariq Ashraf, Meghan A. Wallace, Tehmina Munir, Amjad Ali, Carey-Ann Burnham, Gautam Dantas, Saadia Andleeb (Corresponding Author),
Genome Announcements - Vol.5, Article No.e00850-17
Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways
October 01, 2017
Amnah Siddiqa, Elisa Cirillo, Samar H.K. Tareen, Amjad Ali, Martina Kutmon, Lars M.T. Eijssen, Jamil Ahmed, Chris T. Evelo, Susan L. Coor,
Genomics - Vol.09 (5-6), Pages 408-418, Oct 2017
MicroRNA pharmacogenomics based integrated model of miR-17-92 cluster in sorafenib resistant HCC cells reveals a strategy to forestall drug resistance
September 13, 2017
Faryal Mehwish Awan, Anam Naz, Ayesha Obaid, Aqsa Ikram, Amjad Ali, Jamil Ahmad, Abdul Khaliq Naveed, Hussnain Ahmed Janjua,
Scientific Reports - Vol.7(1):11448
Galleria mellonella is low cost and suitable surrogate host for studying virulence of human pathogenic Vibrio cholerae
September 10, 2017
Habib Bokhari, Amjad Ali, Zobia Noreen, Nicholas Thomson, Brendan W. Wren,
Gene - Volume 628, Pages 1-7, 10 September 2017
Petri Net-Based Model of Helicobacter pylori Mediated Disruption of Tight Junction Proteins in Stomach Lining during Gastric Carcinoma
September 06, 2017
Anam Naz, Ayesha Obaid, Faryal Mehwish Awan, Aqsa Ikram, Jamil Ahmad, Amjad Ali,
Frontiers in Microbiology - Volume 8, Article Number 1682
Prediction of vaccine candidates against Pseudomonas aeruginosa: An integrated genomics and proteomics approach
July 19, 2017
Muhammad Ibrahim Rashid, Anam Naz, Amjad Ali, Saadia Andleeb,
Genomics - GENOMICS Volume: 109 Issue: 3-4 Pages: 274-283
Structural analysis and insight into Zika virus NS5 mediated interferon inhibition
July 15, 2017
Hamza Arshad Dar, Tahreem Zaheer, Rehan Zafar Paracha, Amjad Ali,
Infection, Genetics and Evolution - Volume: 51 Pages: 143-152
Formal modeling of mTOR Associated biological regulatory network reveals novel therapeutic strategy for the treatment of cancer
June 13, 2017
Zurah Bibi, Jamil Ahmad, Amnah Siddiqa, Rehan Zafar Paracha , Tariq Saeed, Amjad Ali, Hussnain Ahmed Janjua , Shakir Ullah, Emna Ben Abdallah , Olivier Roux,
Frontiers in Physiology - Volume: 8, Article Number 416
Characterization and Biological Studies of Copper Nanoparticles Synthesized by Aspergillus niger
April 02, 2017
Syeda Tahira Qousain Naqvi, Ziaullah Shah, Nighat Fatima, Muhammad Imran Qadir, Amjad Ali, Syed Aun Muhammad,
Journal of Bionanoscience - Journal of Bionanoscience, vol 11, pages 136-140
Identification of biological functions of risk loci associated with complex epilepsy: An in-silico approach for data analysis
March 31, 2017
Rubina Dad, Muhammad Ikram Ullah, Amjad Ali, Muhammad Jawad Hassan,
International Journal of Biosciences - International Journal of Biosciences, Vol. 10, No. 3, p. 388-398
Biosynthesis, Characterization, and Biological Activities of Iron Nanoparticles using Sesamum indicum Seeds Extract
March 01, 2017
Farah Bano, Muhammad Baber, Amjad Ali, Ziaullah Shah, Syed Aun Muhammad,
Pharmacognosy Magazine - Volume: 13 Issue: 49 Pages: S33-S36 Supplement: 1
VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology
February 13, 2017
Muhammad Rizwan, Anam Naz, Jamil Ahmad, Kanwal Naz, Ayesha Obaid, Tamsila Parveen, Muhammad Ahsan , Amjad Ali ,
BMC Bioinformatics - BMC BIOINFORMATICS Volume: 18 Article Number: 106, 13 Feb 2017
Structural and functional annotation of human FAM26F: A multifaceted protein having a critical role in the immune system
January 15, 2017
Uzma Malik, Aneela Javed, Amjad Ali , Kashif Asghar,
Gene - Volume: 597 Pages: 66-75
Identification of drug resistance and immune-driven variations in hepatitis C virus (HCV) NS3/4A, NS5A and NS5B regions reveals a new approach toward personalized medicine
January 15, 2017
Aqsa Ikram, Ayesha Obaid, Faryal Mehwish Awan, Rumeza Hanif, Anam Naz, Rehan Zafar Paracha, Amjad Ali, Hussnain Ahmed Janjua,
Antiviral Research - Volume: 137, Pages: 112-124, Published: JAN 2017
Human Drug Targets Identification in Breast Cancer by Computationally Based DNA Microarray Analysis
January 11, 2017
Syed Aun Muhammad, Nighat Fatima, Hasan Afzaal, Ziaullah Shah, Amjad Ali,
British Journal of Pharmaceutical Research - Volume:15, Issue:3, Article Number:32138, Published: 2017
Regulation of Genomic Testing in the Era of Precision Medicine
January 06, 2017
Amjad Ali, Afreenish Hassan, Sammia Rehman, Shifa Tariq Ashraf, Kanwal Naz, Anam Naz,
Book on Progress and Challenges in Precision Medicine - Chapter 7, Pages 129-140
Recent Advances and Challenges in microRNABased Cancer Therapeutics
January 01, 2017
Amjad Ali, Faryal M. Awan, Aqsa Ikram, Shifa T. Ashraf,
Topics in Anti-Cancer Research - Volume 6, Chapter 7, Pages 178-210
Phenotyping in Precision Medicine
January 01, 2017
Rehan Zafar Paracha, Ayesha Obaid, Amjad Ali,
Book on Progress and Challenges in Precision Medicine - Chapter 3, Pages 55-77
Heterogeneous genomic locations within NS3, NS4A and NS4B identified for genotyping and subtyping of Hepatitis C virus: A simple genome analysis approach
October 01, 2016
Sajid Mansoor, Aneela Javed, Amjad Ali, Atika Mansoor,
Infection Genetics and Evolution - Volume 44 Pages 61-68
Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression
September 27, 2016
Muhammad Tariq Saeed, Jamil Ahmed, Shahzina Kanwal, Andreana N. Holowatyj, Iftikhar A. Sheikh, Rehan Zafar Paracha, Muhammad Aamir Shafi, Amnah Siddiqa, Zurah Bibi, Mukaram Khan, Amjad Ali,
PeerJ - Volume 4, Article Number e2348
Prediction of promiscuous T-cell epitopes in the Zika virus polyprotein: An in silico approach
September 01, 2016
Hamza Dar, Tahreem Zaheer, Muhammad Talha Rehman, Amjad Ali, Aneela Javed, Gohar Ayub Khan, Mustafeez Mujtaba Babar, Yasir Waheed,
Asian Pacific Journal of Tropical Medicine - Volume 9, Issue 9, Pages 844-850
Identification of Novel Mutations in the CDKN1B Gene in Invasive Carcinoma of Breast
September 01, 2016
Amania Anwar, Sheeba Murad, Summer Gul, Rehan Zafar Paracha, Amjad Ali, Peter Bloodsworth,
International Journal of Engineering Applied Sciences and Technology, - Volume 1, Issue 10, Pages 19-25
A New Broad-Spectrum Peptide Antibiotic Produced by Bacillus brevis Strain MH9 Isolated from Margalla Hills of Islamabad, Pakistan
June 01, 2016
Syed Aun Muhammad, Amjad Ali, Anam Naz, Afreenish Hassan, Naeem Riaz, Syed Saeed-ul-Hassan, Saadia Andleeb, Debmalya Barh,
International Journal of Peptide Research and Therapeutics - Volume: 22 Issue: 2 Pages: 271-279
Structural characterization of ANGPTL8 (betatrophin) with its interacting partner lipoprotein lipase
January 25, 2016
Rehan Zafar Paracha, Amnah Siddiqa, Jamil Ahmad, Amjad Ali, Zurah Bibi , Babar Aslam,
Computational Biology and Chemistry - Volume 61, Pages 210-220
On the modeling and analysis of the biological regulatory network of NF‑κB activation in HIV‑1 infection
January 08, 2016
Zurah Bibi, Jamil Ahmad, Amjad Ali, Amnah Siddiqa, Shaheen Shahzad, Samar HK Tareen, Hussnain Ahmed Janjua, Shah Khusro,
Complex Adaptive Systems Modeling - Volume 4, Article Number UNSP 1
Frequency of hepatitis E and Hepatitis A virus in water sample collected from Faisalabad, Pakistan
December 10, 2015
Tahir Ahmad, Sadia Anjum, Najam-us-Sahar Sadaf Zaidi, Amjad Ali, Muhammad Waqas, Muhammad Sohail Afzal, Najma Arshad,
Annals of Agricultural and Environmental Medicine - Volume 2, Issue 4, Pages 661-664
In silico analysis of SIGMAR1 variant (rs4879809) segregating in a consanguineous Pakistani family showing amyotrophic lateral sclerosis without frontotemporal lobar dementia
October 02, 2015
Muhammad Ikram Ullah, Arsalan Ahmad, Syed Irfan Raza, Ali Amar, Amjad Ali, Attya Bhatti, Peter John, Aisha Mohyuddin, Wasim Ahmad, Muhammad Jawad Hassan,
Neurogenetics - Volume: 16 Issue: 4 Pages: 299-306
Identification of Circulating Biomarker Candidates for Hepatocellular Carcinoma (HCC): An Integrated Prioritization Approach
September 28, 2015
Faryal Mehwish Awan, Anam Naz, Ayesha Obaid, Amjad Ali, Jamil Ahmad, Sadia Anjum, Hussnain Ahmed Janjua,
PLoS ONE - Volume 10(9), Article Number e0138913
Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: A reverse vaccinology based approach
June 01, 2015
Anam Naz, Faryal Mehwish Awan, Ayesha Obaid, Syed Aun Muhammad, Rehan Zafar Paracha, Jamil Ahmed, Amjad Ali,
Infection, Genetics and Evolution - Volume 32, Pages 280-291
An integrated structural proteomics approach along the druggable genome of Corynebacterium pseudotuberculosis species for putative druggable targets
May 26, 2015
Leandro G Radusky, Syed Shah Hassan, Esteban Lanzarotti, Sandeep Tiwari, Syed Babar Jamal, Javed Ali, Amjad Ali, Rafaela Salgado Ferreira, Debmalya Barh, Artur Silva, Adrián G Turjanski, Vasco AC Azevedo,
BMC Genomics - Volume 16 Suppl 5(Suppl 5):S9, Pages 1-8
Modeling and analysis of innate immune responses induced by the host cells against hepatitis C virus infection
May 01, 2015
Ayesha Obaid, Jamil Ahmed , Anam Naz, Faryal Mehwish Awan, Rehan Zafar Paracha, Samar Hayat Khan Tareen, Sadia Anjum, Abida Raza, Jan Baumbach, Amjad Ali,
Integrative Biology - Volume 7, Issue 5, Pages 544-559
Structural modeling and analysis of dengue-mediated inhibition of interferon signaling pathway
April 28, 2015
Babar Aslam, Jamil Ahmed, Amjad Ali, Rehan Zafar Paracha, Samar Hayat Khan Tareen, Shah Khusro, Taseer Ahmad, S.A. Muhammad, Umar Niazi, V. Azevedo,
Genetics and Molecular Research - Volume 14, Issue 2, Pages 4215-4237
Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets
January 29, 2015
Amjad Ali, Anam Naz, Siomar C Soares, Marriam Bakhtiar, Sandeep Tiwari, Syed S Hassan, Fazal Hanan, Rommel Ramos, Ulisses Pereira, Debmalya Barh, Henrique César Pereira Figueiredo, David W. Ussery, Anderson Miyoshi, Artur Silva, Vasco Azevedo,
BioMed Research International - Volume 2015, Article ID 139580, 17 pages
Helicobacter pylori Virulence Regulatory Network: Insights into the Host-Environment and Pathogen Interactions
January 21, 2015
Gul Sanobar, Jamil Ahmed, Rehan Zafar Paracha, Anam Naz, Babar Aslam, Ayesha Obaid, Afreenish Hassan, Amjad Ali,
NUST Journal of Natural Sciences - Volume 3, Issue 1, Pages 65-77
Autism Spectrum Disorders (ASD): From Diagnosis to Management
January 21, 2015
Amjad Ali, Syeda Marriam Bakhtiar, Vasco Azevedo,
Molecular and Genetic Medicine - Vol.9:154, Pages 03
On the modelling and analysis of the regulatory network of dengue virus pathogenesis and clearance
December 01, 2014
Babar Aslam, Jamil Ahmad, Amjad ali, Rehan Zafar Paracha, Samar Hayat Khan Tareen, Umar Niazi, Tariq Saeed,
Computational Biology and Chemistry - Volume: 53 Pages: 277-291 Part: B
Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis
October 27, 2014
Syed Shah Hassan, Sandeep tiwari, Luís Carlos Guimarães, Syed Babar Jamal, Edson Folador, Neha Barve Sharma, Siomar de Castro Soares, Síntia Almeida, Amjad Ali, Arshad Islam, Fabiana Dias Póvoa, Vinicius Augusto Carvalho de Abreu, Neha Jain, Antarip Bhattacharya , Lucky Juneja, Anderson Miyoshi, Artur Silva, Debmalya Barh, Adrian Gustavo Turjanski, Vasco Azevedo, Rafaela Salgado Ferreira,
BMC Genomics - Volume 15, Issue 7, Article Number: S3
In-silico analysis of claudin-5 reveals novel putative sites for post-translational modifications: Insights into potential molecular determinants of blood-brain barrier breach during HIV-1 infiltration
October 01, 2014
Faryal Mehwish Awan, Sadia Anjum, Ayesha Obaid, Amjad Ali, Rehan Zafar Paracha, Hussnain Ahmed Janjua,
Infection, Genetics and Evolution - Volume 27, Pages 355-365
Formal Modelling of Toll like Receptor 4 and JAK/STAT Signalling Pathways: Insight into the Roles of SOCS-1, Interferon-β and Proinflammatory Cytokines in Sepsis
September 25, 2014
Rehan Zafar Paracha, Jamil Ahmed , Amjad Ali, Riaz Hussain, Umar Niaz, Samar Hayat Khan Tareen, Babar Aslam,
PLoS ONE - Volume 9, Issue 9, Article Number e108466
Structural evaluation of BTK and PKC delta mediated phosphorylation of MAL at positions Tyr86 and Tyr106
August 01, 2014
Rehan Zafar Paracha, Amjad Ali, Jamil Ahmad, Riaz Hussain, Umar Niazi, Syed Aun Muhammad,
Computational Biology and Chemistry - Volume: 51 Pages: 22-35
In silico study of anti-carcinogenic lysyl oxidase-like 2 inhibitors
August 01, 2014
Syed Aun Muhammad, Amjad Ali, Tariq Ismail, Rehan Zafar Paracha, Umair Ilyas, Jamil Ahmed ,
Computational Biology and Chemistry - Volume 51, Pages 71-82
Structural evaluation of BTK and PKCδ mediated phosphorylation of MAL at positions Tyr86 and Tyr106
August 01, 2014
Rehan Zafar Paracha, Amjad Ali, Jamil Ahmad, Riaz Hussain, Umar Niazi , Syed Aun Muhammad,
COMPUTATIONAL BIOLOGY AND CHEMISTRY - Volume 51, Pages 22-35
Identifying human disease genes: advances in molecular genetics and computational approaches
July 04, 2014
S.M. Bakhtiar, Amjad Ali, S.M. Baig, D. Barh, A. Miyoshi, V. Azevedo,
Genetics and Molecular Research - Volume: 13 Issue: 3 Pages: 5073-5087
Prioritizing drug targets in Clostridium botulinum with a computational systems biology approach
July 02, 2014
Syed Aun Muhammad, Safia Ahmed, Amjad Ali, Hui Huang, Xiaogang Wu, X. Frank Yang, Anam Naz, Jake Chen,
Genomics - Volume: 104 Issue: 1 Pages: 24-35
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production
August 20, 2013
Siomar C. Soares, Eva Trost, Rommel Thiago J. Ramos, Adriana R. Carneiro, Anderson R. Santos, Anne C. Pinto, Eudes Barbosa, Flavia Aburjail, Amjad Ali, Syed Shah Hassan, Andreas Tauch,
Journal of Biotechnology - Volume 167, Issue 2, Pages 135-141
Complete genome sequence of Streptococcus agalactiae strain SA20-06, A fish pathogen associated to meningoencephalitis outbreaks
June 15, 2013
Ulisses de Pádua Pereira, Anderson Rodrigues dos Santos, Syed Shah Hassan, Sintia Silva de Almeida, Maria Silvanira Barbosa, Amjad Ali, Syeda Marriam Bakhtiar, Vasco Azevedo, Henrique César Pereira Figueiredo,
Standards in Genomic Sciences - Volume 8, Issue 2, Pages 188-197
Implications of the human microbiome in inflammatory bowel diseases
May 01, 2013
Syeda Marriam Bakhtiar, Jean Guy LeBlanc, Emiliano Salvucci, Amjad Ali, Rebeca Martin, Philippe Langella, Jean-Marc Chatel, Anderson Miyoshi, Luis G. Bermúdez-Humarán, Vasco Azevedo,
FEMS Microbiology Letters - Volume 342, Issue 1, Pages 10-17
Microbial Comparative Genomics: An Overview of Tools and Insights Into The Genus Corynebacterium
March 06, 2013
Amjad Ali, Siomar C. Soares, Eudes Barbosa, Anderson R. Santos, Debmalya Barh, Syeda Marriam Bakhtiar, Syed Shah Hassan, David W Ussery, Artur Silva, Anderson Miyoshi, Vasco Azevedo,
Journal of Bacteriology and Parasitology - Volume 4, Issue 2, Article Number 1000167
Conserved host-pathogen PPIs: Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds
January 03, 2013
Debmalya Barh, Krishnakant Gupta, Neha Jain, Nidia León-Sicairos, Adrian Canizalez-Roman, Sandeep Tiwari, Syed Shah Hassan, Amjad Ali, Syeda Marriam Bakhtiar, Vasco Azevedo,
Integrative Biology - Volume 5, Issue 3, Pages 495-509
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
January 01, 2013
Siomar C. Soares, Artur Silva, Eva Trost, Jochen Blom, Rommel Ramos, Adriana R. Carneiro, Amjad Ali, Vasco Azevedo,
PLoS ONE - Volume 8, Issue 1, Article Number e53818
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology
December 19, 2012
Syed Shah Hassan, Luís Carlos Guimarães, Ulisses de Pádua Pereira, Arshad Islam, Amjad Ali, Syeda Marriam Bakhtiar, Dayana Riberio, Anderson Rodrigues dos Santos, Neha Jain, Vasco Azevedo,
Standards in Genomic Sciences - Volume 7, Issue 2, Pages 189-199
Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica
December 01, 2012
Adriana R. Carneiro, Rommel Thiago J. Ramos, Hivana Dall'Agnol, Anne Cybelle Pinto, Siomar de Castro Soares, Anderson Rodrigues Santos, Luís Carlos Guimarães, Sintia Silva de Almeida, Rafael Azevedo Baraúna, Diego Assis das Graças, Luciano Chaves Franco, Amjad Ali, Syed Shah Hassan, Artur Silva,
Journal of Bacteriology - Volume 194, Issue 23, Pages 6689-6690
Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets
October 25, 2012
Amjad Ali, Siomar C. Soares, Anderson Rodrigues Santos, Luís Carlos Guimarães, Syeda Marriam Bakhtiar, Syed Shah Hassan, Vasco Azevedo,
Gene - Volume 508, Issue 2, Pages 145-156
Whole-genome sequence of Corynebacterium pseudotuberculosis strain Cp162, isolated from camel
October 01, 2012
Syed Shah Hassan, Maria Paula C. Schneider, Rommel Thiago J. Ramos, Adriana R. Carneiro, Alex Ranieri, Luís Carlos Guimarães, Amjad Ali, Syeda Marriam Bakhtiar, Artur Silva,
Journal of Bacteriology - Volume 194, Issue 20, Pages 5718-5719
Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in scotland and Australia, respectively
September 01, 2012
Florence E. Pethick, Alex F. Lainson, Raja Yaga, Louise Teixeira Cerdeira, Artur Silva, Anne C. Pinto, Amjad Ali, Syeda Marriam Bakhtiar, Maria Silvanira Barbosa, Michael C. Fontaine,
Journal of Bacteriology - Volume 194, Issue 17, Pages 4736-4737
Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a Horse in North America
August 01, 2012
Florence E. Pethick, Alex F. Lainson , Raja Yaga, Allen Flockhart, David G. E. Smith, Willie Donachie, Louise Teixeira Cerdeira, Artur Silva, Vasco Azevedo, Amjad Ali, Michael C. Fontaine,
Journal of Bacteriology - Volume 194, Issue 16, Pages 4476-4476
Complete genome sequence of Corynebacterium pseudotuberculosis strain cp267, isolated from a llama
July 01, 2012
Thiago Lopes, Artur Silva, Rommel Thiago J. Ramos, Adriana R. Carneiro, Fernanda Alves Dorella, Syeda Marriam Bakhtiar, Amjad Ali, Vasco Azevedo,
Journal of Bacteriology - Volume 194, Issue 13, Pages 3567-3568
Reannotation of the Corynebacterium diphtheriae NCTC13129 genome as a new approach to studying gene targets connected to virulence and pathogenicity in diphtheria
February 03, 2012
Vivian D'Afonseca, Siomar C. Soares, Amjad Ali, Anderson Rodrigues Santos, Anne C. Pinto, Anderson Miyoshi, Vasco Azevedo,
Open Access Bioinformatics - Volume 2012:4, Pages 1-13
Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya
December 01, 2011
Louise Teixeira Cerdeira, Maria Paula Cruz Schneider, Anne Cybelle Pinto, Sintia Silva de Almeida, Anderson Rodrigues dos Santos, Eudes Guilherme Vieira Barbosa, Amjad Ali, Vasco Azevedo, Artur Silva,
Journal of Bacteriology - Volume 193, Issue 24, Pages 7025-7026
Whole-Genome Sequence of Corynebacterium pseudotuberculosis PAT10 Strain Isolated from Sheep in Patagonia, Argentina
November 01, 2011
Louise Teixeira Cerdeira, Anne Cybelle Pinto, Maria Paula Cruz Schneider, Sintia Silva de Almeida, Anderson Rodrigues dos Santos, Eudes Guilherme Vieira Barbosa, Amjad Ali, Maria Silvanira Barbosa, Adriana Ribeiro Carneiro, Artur Silva,
Journal of Bacteriology - Volume 193, Issue 22, Pages 6420-6421
A novel comparative genomics analysis for common drug and vaccine targets in Corynebacterium pseudotuberculosis and other CMN group of human pathogens
July 01, 2011
Debmalya Barh, Neha Jain, Sandeep Tiwari, Bibhu Prasad Parida, Vivian D'Afonseca, Liwei Li, Amjad Ali, Anderson Rodrigues Santos, Luís Carlos Guimarães, Siomar De Castro Soares, Artur Silva, Anil Kumar, Vasco Azevedo,
Chemical Biology and Drug Design - Volume 78, Issue 1, Pages 73-84
The Reverse Vaccinology - A Contextual overview
May 03, 2011
Anderson Santos, Amjad Ali, Eudes Barbosa, Artur Silva, Anderson Miyoshi, Debmalya Barh, Vasco Azevedo,
The IIOAB Journal - Volume 2, Issue 4, Pages 8-15
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two corynebacterium pseudotuberculosis strains
April 18, 2011
Jerônimo C. Ruiz, Vivian D'Afonseca, Artur Silva, Amjad Ali, Anne C. Pinto, Vasco Azevedo, Anne C. Pinto, Anderson R. Santos, Aryanne A. M. C. Rocha, Débora O. Lopes, Fernanda A. Dorella, Luis G. C. Pacheco, Marcília P. Costa, Meritxell Z. Turk, Núbia Seyffert, Pablo M. R. O. Moraes, Siomar C. Soares, Sintia S. Almeida, Thiago L. P. Castro, Vinicius A. C. Abreu, Eva Trost, Jan Baumbach, Andreas Tauch, Vasco Azevedo,
PLoS ONE - Volume 6, Issue 4, Article Number e18551
In silico subtractive genomics for target identification in human bacterial pathogens
March 01, 2011
Debmalya Barh, Sandeep Tiwari, Neha Jain, Amjad Ali, Anderson Rodrigues Santos, Amarendra Narayan Misra, Vasco Azevedo, Anil Kumar,
Drug Development Research - Volume 72, Issue 2, Pages 162-177
Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis
January 01, 2011
Artur Silva, Maria Paula C. Schneider, Louise Cerdeira, Maria Silvanira Barbosa, Rommel Thiago J. Ramos, Adriana R. Carneiro, Rodrigo Santos, Marília Lima, Vivian D'Afonseca, Sintia S. Almeida, Anderson R. Santos, Siomar C. Soares, Anne C. Pinto, Amjad Ali, Fernanda A. Dorella, Flavia Rocha, Vinicius Augusto Carvalho de Abreu, Eva Trost, Andreas Tauch, Nahum Shpigel, Anderson Miyoshi, Vasco Azevedo,
Journal of Bacteriology - Volume 193, Issue 1, Pages 323-324
Loss of Ca v 1.3 (CACNA1D) function in a human channelopathy with bradycardia and congenital deafness
January 01, 2011
Shahid Mahmood Baig, Alexandra Koschak, Andreas Lieb, Mathias Gebhart, Claudia Dafinger, Gudrun Nürnberg, Amjad Ali, Ilyas Ahmad , Martina J Sinnegger-Brauns, Niels Brandt, Jutta Engel, Matteo E Mangoni, Muhammad Farooq, Habib U Khan, Peter Nürnberg, Jörg Striessnig, Hanno J Bolz,
Nature Neuroscience - Volume 14, Issue 1, Pages 77-86
Preaxial polydactyly/triphalangeal thumb is associated with changed transcription factor-binding affinity in a family with a novel point mutation in the long-range cis-regulatory element ZRS
June 01, 2010
Muhammad Farooq, Jesper T Troelsen, Mette Boyd, Hans Eiberg, Lars Hansen, Muhammad Sajid Hussain, Shoib ur Rehman, Ayesha Azhar, Amjad Ali, Syeda Marriam Bakhtiar, Niels Tommerup, Shahid Mahmood Baig, Klaus W Kjaer,
European Journal of Human Genetics - Volume 18, Issue 6, Pages 733-736
A novel missense mutation in the EDA gene associated with X-linked recessive isolated hypodontia
October 01, 2008
Muhammad Rasool, Jens Schuster, Muhammad Aslam, Muhammad Tariq, Ilyas Ahmad , Amjad Ali, Miriam Entesarian, Niklas Dahl, Shahid Mahmood Baig,
Journal of Human Genetic - Volume 53, Issue 10, Pages 894-898
Conferences
Computational screening of secretory proteins with brain-specific expression in Glioblastoma multiforme
May 10, 2022 - May 13, 2022
Sumera, Sanila Amber, Fatima Javed Mirza, Amjad Ali, Saadia Zahid,
1st International Conference on Engineering and Applied Natural Sciences
Invited as a keynote speaker to give a talk on Microbial Bioinformatics and Reverse Vaccinology Approaches to deal with Big Data: Genomics Data.
November 09, 2021 - November 10, 2021
Amjad Ali,
1st international conference on Bioinformatics and Computational Methods in Post Genomic Era
Keynote speaker and organizing chair
October 27, 2021 - October 29, 2021
Amjad Ali,
1st International Conference on Water, Energy and Environment for Sustainability (IC-WEES) Biotechnologies for Environment, Health and Agriculture
Formal Modeling of the Key Determinants of Hepatitis C Virus (HCV) Induced Adaptive Immune Response Network: An Integrative Approach to Map the Cellular and Cytokine-Mediated Host Immune Regulations
July 02, 2018 - July 05, 2018
Ayesha Obaid, Anam Naz, Shifa T. Ashraf, Faryal M. Awan, Aqsa Ikram, Tariq Saeed, Abida Raza, Jamil Ahmed, Amjad Ali,
International Conference on Computational Science and Its Applications, ICCSA 2018
On the Use of Betweenness Centrality for Selection of Plausible Trajectories in Qualitative Biological Regulatory Networks
April 25, 2018 - April 27, 2018
Muhammad Tariq Saeed, Jamil Ahmed, Amjad Ali,
6th International Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2018
Modelling of Adaptive and Innate Immune Responses and Identification of Crosstalk Amongst Various Signaling Pathways Involved in HCV Infection using System Biology Approach
January 29, 2018 - January 30, 2018
Ayesha Obaid, Anam Naz, Faryal M. Awan, Aqsa Ikram, Jamil Ahmed, Amjad Ali,
ISERD - 326th International Conference on Medical and Health Sciences (ICMHS)
Qualitative modeling and analysis of the indoleamine 2,3-dioxygenase regulatory network in homeostasis and disease
August 19, 2014 - August 21, 2014
Kashif Asghar , Jamil Ahmed, Javaria Ashraf, Amjad Ali, Hussnain Ahmed Janjua, Sheeba Murad,
2014 11th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)
Visiting Scientist
Beijing Institute of Genomics, Chinese Academy of Sciences
September 03, 2019 - November 29, 2019
Visiting Researcher
Technical University of Denmark
September 15, 2011 - December 15, 2011
Researcher
Federal University of Minas Gerais
June 02, 2010 - May 15, 2013
Research Associate
National Institute of Biotechnology and Genetic Engineering
September 15, 2007 - October 14, 2009